Jochen Blom : rechercher sur Z-Library

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1

Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella

Palmer, Marike, Steenkamp, Emma T., Coetzee, Martin P. A., Chan, Wai-Yin, van Zyl, Elritha, De Maayer, Pieter, Coutinho, Teresa A., Blom, Jochen, Smits, Theo H. M., Duffy, Brion, Venter, Stephanus N.

Journal:

Antonie van Leeuwenhoek

Année:

2017

Langue:

english

Fichier:

PDF, 2.81 MB

english, 2017

2

Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

Matthias Hackl, Tobias Jakobi, Jochen Blom, Daniel Doppmeier, Karina Brinkrolf, Rafael Szczepanowski, Stephan H. Bernhart, Christian Höner zu Siederdissen, Juan A. Hernandez Bort, Matthias Wieser, Ren

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2011

3

Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.

Smits, Theo H. M., Rezzonico, Fabio, Kamber, Tim, Blom, Jochen, Goesmann, Alexander, Frey, Jürg E., Duffy, Brion

Journal:

Molecular Plant-Microbe Interactions

Année:

2010

Langue:

english

Fichier:

PDF, 420 KB

english, 2010

4

The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome

Susanne Schneiker-Bekel, Daniel Wibberg, Thomas Bekel, Jochen Blom, Burkhard Linke, Heiko Neuweger, Michael Stiens, Frank-Jörg Vorhölter, Stefan Weidner, Alexander Goesmann, Alfred Pühler, Andreas Sch

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2011

5

Complete genome sequence and lifestyle of black-pigmentedCorynebacterium aurimucosumATCC 700975 (formerlyC. nigricansCN-1) isolated from a vaginal swab of a woman with spontaneous abortion

Eva Trost, Susanne Götker, Jessica Schneider, Susanne Schneiker-Bekel, Rafael Szczepanowski, Alexandra Tilker, Prisca Viehoever, Walter Arnold, Thomas Bekel, Jochen Blom, Karl-Heinz Gartemann, Burkhar

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 3.07 MB

english, 2010

6

Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element

Rachel A. Mann, Jochen Blom, Andreas Bühlmann, Kim M. Plummer, Steven V. Beer, Joanne E. Luck, Alexander Goesmann, Jürg E. Frey, Brendan C. Rodoni, Brion Duffy, Theo H.M. Smits

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 647 KB

english, 2012

7

Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics

Smits, Theo H.M., Rezzonico, Fabio, López, María M., Blom, Jochen, Goesmann, Alexander, Frey, Jürg E., Duffy, Brion

Journal:

Systematic and Applied Microbiology

Année:

2013

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2013

8

Complete Genome Sequences of Three Isolates of Xanthomonas fragariae , the Bacterium Responsible for Angular Leaf Spots on Strawberry Plants

Gétaz, Michael, van der Wolf, Jan M., Blom, Jochen, Pothier, Joël F.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 136 KB

english, 2017

9

Complete Genome Sequence of Pseudomonas viridiflava CFBP 1590, Isolated from Diseased Cherry in France

Ruinelli, Michela, Blom, Jochen, Pothier, Joël F.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 138 KB

english, 2017

10

Strain Serratia sp. S119: A potential biofertilizer for peanut and maize and a model bacterium to study phosphate solubilization mechanisms

Ludueña, Liliana Mercedes, Anzuay, Maria Soledad, Angelini, Jorge Guillermo, McIntosh, Matthew, Becker, Anke, Rupp, Oliver, Goesmann, Alexander, Blom, Jochen, Fabra, Adriana, Taurian, Tania

Journal:

Applied Soil Ecology

Année:

2018

Langue:

english

Fichier:

PDF, 548 KB

english, 2018

11

Corrigendum to “Phylogenomic re-assessment of the thermophilic genus Geobacillus ” [Syst. Appl. Microbiol. 39 (2016) 527–533]

Aliyu, Habibu, Lebre, Pedro, Blom, Jochen, Cowan, Don, De Maayer, Pieter

Journal:

Systematic and Applied Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 232 KB

english, 2018

12

Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii

De Maayer, Pieter, Aliyu, Habibu, Vikram, Surendra, Blom, Jochen, Duffy, Brion, Cowan, Don A., Smits, Theo H. M., Venter, Stephanus N., Coutinho, Teresa A.

Journal:

Frontiers in Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2017

13

Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp

Ruinelli, Michela, Blom, Jochen, Smits, Theo H. M., Pothier, Joël F.

Journal:

Année:

2019

Fichier:

PDF, 2.19 MB

2019

14

Comparative Genomics of Streptococcus thermophilus Support Important Traits Concerning the Evolution, Biology and Technological Properties of the Species

Alexandraki, Voula, Kazou, Maria, Blom, Jochen, Pot, Bruno, Papadimitriou, Konstantinos, Tsakalidou, Effie

Journal:

Frontiers in Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 4.94 MB

english, 2019

15

Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus)

Tekedar, Hasan C., Arick, Mark A., Hsu, Chuan-Yu, Thrash, Adam, Blom, Jochen, Lawrence, Mark L., Abdelhamed, Hossam

Journal:

Frontiers in Cellular and Infection Microbiology

Année:

2020

Fichier:

PDF, 10.01 MB

2020

16

Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations

GÃ©taz, Michael, Blom, Jochen, Smits, Theo H. M., Pothier, JoÃ«l F.

Journal:

Phytopathology Research

Année:

2020

Fichier:

PDF, 3.99 MB

2020

17

The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity

Francesco Imperi, Luísa C.S. Antunes, Jochen Blom, Laura Villa, Michele Iacono, Paolo Visca, Alessandra Carattoli

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 279 KB

english, 2011

18

Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids

Andreas Tauch, Jessica Schneider, Rafael Szczepanowski, Alexandra Tilker, Prisca Viehoever, Karl-Heinz Gartemann, Walter Arnold, Jochen Blom, Karina Brinkrolf, Iris Brune, Susanne Götker, Bernd Weissh

Journal:

Journal of Biotechnology

Année:

2008

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2008

19

RAPYD — Rapid Annotation Platform for Yeast Data

Jessica Schneider, Jochen Blom, Sebastian Jaenicke, Burkhard Linke, Karina Brinkrolf, Heiko Neuweger, Andreas Tauch, Alexander Goesmann

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2011

20

RhizoRegNet—A database of rhizobial transcription factors and regulatory networks

Elizaveta Krol, Jochen Blom, Jörn Winnebald, Alexander Berhörster, Melanie J. Barnett, Alexander Goesmann, Jan Baumbach, Anke Becker

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2011

21

Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions

Rafael Szczepanowski, Felix Eikmeyer, Jannis Harfmann, Jochen Blom, Linda M. Rogers, Eva M. Top, Andreas Schlüter

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2011

22

Genome sequence of B. amyloliquefaciens type strain DSM7T reveals differences to plant-associated B. amyloliquefaciens FZB42

Christian Rückert, Jochen Blom, XiaoHua Chen, Oleg Reva, Rainer Borriss

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 935 KB

english, 2011

23

Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid

Daniel Wibberg, Jochen Blom, Sebastian Jaenicke, Florian Kollin, Oliver Rupp, Birgit Scharf, Susanne Schneiker-Bekel, Rafael Sczcepanowski, Alexander Goesmann, Joao Carlos Setubal, Rüdiger Schmitt, Al

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 2.15 MB

english, 2011

24

Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean

Isabel Margaret, Anke Becker, Jochen Blom, Ildefonso Bonilla, Alexander Goesmann, Michael Göttfert, Javier Lloret, Virginie Mittard-Runte, Christian Rückert, José E. Ruiz-Sainz, José María Vinardell,

Journal:

Journal of Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

25

Complete genome and comparative analysis ofStreptococcus gallolyticussubsp.gallolyticus, an emerging pathogen of infective endocarditis

Dennis Hinse, Tanja Vollmer, Christian Rückert, Jochen Blom, Jörn Kalinowski, Cornelius Knabbe, Jens Dreier

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 590 KB

english, 2011

26

The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis

Joël F. Pothier, Frank-Jörg Vorhölter, Jochen Blom, Alexander Goesmann, Alfred Pühler, Theo H.M. Smits, Brion Duffy

Journal:

FEMS Microbiology Letters

Année:

2011

Langue:

english

Fichier:

PDF, 339 KB

english, 2011

27

Comparative genomics of Lactobacillus

Ravi Kant, Jochen Blom, Airi Palva, Roland J. Siezen, Willem M. de Vos

Journal:

Microbial Biotechnology

Année:

2011

Langue:

english

Fichier:

PDF, 581 KB

english, 2011

28

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

Jochen Blom, Stefan P Albaum, Daniel Doppmeier, Alfred Pühler, Frank-Jörg Vorhölter, Martha Zakrzewski, Alexander Goesmann

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 482 KB

english, 2009

29

Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenesCECT5344

Víctor M. Luque-Almagro, Felipe Acera, Ma Isabel Igeño, Daniel Wibberg, Ma Dolores Roldán, Lara P. Sáez, Magdalena Hennig, Alberto Quesada, Ma José Huertas, Jochen Blom, Faustino Merchán, Ma Paz Escri

Journal:

Environmental Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2012

30

Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications

Ruijter, Jan M., Pfaffl, Michael W., Zhao, Sheng, Spiess, Andrej N., Boggy, Gregory, Blom, Jochen, Rutledge, Robert G., Sisti, Davide, Lievens, Antoon, De Preter, Katleen, Derveaux, Stefaan, Hellemans

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2013

31

Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage

Stefan Heinl, Daniel Wibberg, Felix Eikmeyer, Rafael Szczepanowski, Jochen Blom, Burkhard Linke, Alexander Goesmann, Reingard Grabherr, Helmut Schwab, Alfred Pühler, Andreas Schlüter

Journal:

Journal of Biotechnology

Année:

2012

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2012

32

Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogenCorynebacterium resistensDSM 45100 isolated from blood samples of a leukemia patient

Schröder, Jasmin, Maus, Irena, Meyer, Katja, Wördemann, Stephanie, Blom, Jochen, Jaenicke, Sebastian, Schneider, Jessica, Trost, Eva, Tauch, Andreas

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2012

33

Complete genome sequence ofSaccharothrix espanaensisDSM 44229Tand comparison to the other completely sequencedPseudonocardiaceae

Strobel, Tina, Al-Dilaimi, Arwa, Blom, Jochen, Gessner, Arne, Kalinowski, Jörn, Luzhetska, Marta, Pühler, Alfred, Szczepanowski, Rafael, Bechthold, Andreas, Rückert, Christian

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2012

34

The large universalPantoeaplasmid LPP-1 plays a major role in biological and ecological diversification

De Maayer, Pieter, Chan, Wai-Yin, Blom, Jochen, Venter, Stephanus N, Duffy, Brion, Smits, Theo H M, Coutinho, Teresa A

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 583 KB

english, 2012

35

The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection

Wichmann, Fabienne, Vorhölter, Frank-Jörg, Hersemann, Lena, Widmer, Franco, Blom, Jochen, Niehaus, Karsten, Reinhard, Sonja, Conradin, Constanze, Kölliker, Roland

Journal:

Molecular Plant Pathology

Année:

2013

Langue:

english

Fichier:

PDF, 576 KB

english, 2013

36

Polymyxin P is the active principle in suppressing phytopathogenicErwinia spp.by the biocontrol rhizobacteriumPaenibacillus polymyxaM-1

Ben Niu, Joachim Vater, Christian Rueckert, Jochen Blom, Maik Lehmann…

Journal:

BMC Microbiology

Année:

2013

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2013

37

A lack of genetic basis for biovar differentiation in clinically important Corynebacterium diphtheriae from whole genome sequencing

Sangal, Vartul, Burkovski, Andreas, Hunt, Alison C., Edwards, Becky, Blom, Jochen, Hoskisson, Paul A.

Journal:

Infection, Genetics and Evolution

Année:

2014

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2014

38

Draft genome sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis

Wibberg, Daniel, Blom, Jochen, Rückert, Christian, Winkler, Anika, Albersmeier, Andreas, Pühler, Alfred, Schlüter, Andreas, Scharf, Birgit E.

Journal:

Journal of Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 314 KB

english, 2013

39

Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation

Koeck, Daniela E., Wibberg, Daniel, Koellmeier, Tanja, Blom, Jochen, Jaenicke, Sebastian, Winkler, Anika, Albersmeier, Andreas, Zverlov, Vladimir V., Pühler, Alfred, Schwarz, Wolfgang H., Schlüter, An

Journal:

Journal of Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 349 KB

english, 2013

40

Chronological changes of the amplitude-integrated EEG in a neonate with molybdenum cofactor deficiency

Sie, Sintha D., Jonge, Rogier C. J., Blom, Henk J., Mulder, Margot F., Reiss, Jochen, Vermeulen, R. J., Peeters-Scholte, Cacha M. P. C. D.

Journal:

Journal of Inherited Metabolic Disease

Année:

2010

Langue:

english

Fichier:

PDF, 802 KB

english, 2010

41

Erratum

Liu, Yang, Chen, Xinglin, Blom, Jochen, Yi, Zhiwei, Wen, Jian, Zeng, Runying

Journal:

Toxicology Letters

Année:

1993

Fichier:

PDF, 29 KB

1993

42

Draft genome of formaldehyde-degrading strain, Pseudomonas monteilii IOFA19

Liu, Yang, Chen, Xinglin, Blom, Jochen, Yi, Zhiwei, Wen, Jian, Zeng, Runying

Journal:

Marine Genomics

Année:

2014

Langue:

english

Fichier:

PDF, 415 KB

english, 2014

43

Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites

He, Pengfei, Hao, Kun, Blom, Jochen, Rückert, Christian, Vater, Joachim, Mao, Zichao, Wu, Yixin, Hou, Mingsheng, He, Pengbo, He, Yueqiu, Borriss, Rainer

Journal:

Journal of Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2013

44

Comparative genomics of the dairy isolateStreptococcus macedonicusACA-DC 198 against related members of theStreptococcus bovis/Streptococcus equinuscomplex

Papadimitriou, Konstantinos, Anastasiou, Rania, Mavrogonatou, Eleni, Blom, Jochen, Papandreou, Nikos C, Hamodrakas, Stavros J, Ferreira, Stéphanie, Renault, Pierre, Supply, Philip, Pot, Bruno, Tsakali

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 798 KB

english, 2014

45

Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea

Kamanda Ngugi, David, Blom, Jochen, Alam, Intikhab, Rashid, Mamoon, Ba-Alawi, Wail, Zhang, Guishan, Hikmawan, Tyas, Guan, Yue, Antunes, Andre, Siam, Rania, El Dorry, Hamza, Bajic, Vladimir, Stingl, Ul

Journal:

The ISME Journal

Année:

2015

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2015

46

A novel plasmid pEA68 ofErwinia amylovoraand the description of a new family of plasmids

Ismail, Emadeldeen, Blom, Jochen, Bultreys, Alain, Ivanović, Milan, Obradović, Aleksa, van Doorn, Joop, Bergsma-Vlami, Maria, Maes, Martine, Willems, Anne, Duffy, Brion, Stockwell, Virginia O., Smits,

Journal:

Archives of Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 942 KB

english, 2014

47

Insights into the annotated genome sequence of Methanoculleus bourgensis MS2T, related to dominant methanogens in biogas-producing plants

Maus, Irena, Wibberg, Daniel, Stantscheff, Robbin, Stolze, Yvonne, Blom, Jochen, Eikmeyer, Felix-Gregor, Fracowiak, Jochen, König, Helmut, Pühler, Alfred, Schlüter, Andreas

Journal:

Journal of Biotechnology

Année:

2015

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2015

48

The Ariadne principles: how to handle multimorbidity in primary care consultations

Muth, Christiane, van den Akker, Marjan, Blom, Jeanet W, Mallen, Christian D, Rochon, Justine, Schellevis, François G, Becker, Annette, Beyer, Martin, Gensichen, Jochen, Kirchner, Hanna, Perera, Rafae

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 609 KB

english, 2014

49

Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex

Morley, Laura, McNally, Alan, Paszkiewicz, Konrad, Corander, Jukka, Méric, Guillaume, Sheppard, Samuel K., Blom, Jochen, Manning, Georgina, Schloss, P. D.

Journal:

Applied and Environmental Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2015

50

Comparative functional pan-genome analyses to build connections between genomic dynamics and phenotypic evolution in polycyclic aromatic hydrocarbon metabolism in the genus Mycobacterium

Kweon, Ohgew, Kim, Seong-Jae, Blom, Jochen, Kim, Sung-Kwan, Kim, Bong-Soo, Baek, Dong-Heon, Park, Su, Sutherland, John B, Cerniglia, Carl E

Journal:

BMC Evolutionary Biology

Année:

2015

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2015